Atlas One · Human · Whole-Body

Human Body

The integrated organism — where all scales converge into physiology, disease, and healing.

Scale 08-whole-body · UBERON:0000468 (multicellular organism) · 11 major systems · 37.2 trillion cells · ~70 kg reference adult

37.2TTotal cells
11Major systems
500BBlood cells/day
~250mL O₂/min (rest)
~5 LVO₂max (trained)
Scale 08 — Whole-Body · Organism · UBERON:0000468

Human Body

The scale at which medicine operates: symptoms are experienced here, diagnoses made here, therapies applied here, outcomes measured here. All seven scales below — from electron orbitals to organ systems — contribute constraints whose emergent behavior is a living person.

Overview — Integrative Biology

The human body is a tightly coupled network of eleven major organ systems operating under constant homeostatic regulation. No system acts in isolation: the cardiovascular system carries oxygen and hormones that every other system depends on; the nervous system encodes and coordinates; the endocrine system broadcasts chemical signals with whole-body reach; the musculoskeletal system houses haematopoiesis and enables movement; the immune system surveils every tissue. Understanding any single disease requires tracing its origins and consequences across multiple scales and systems simultaneously.

This atlas entry serves as the whole-body hub — a navigational and conceptual anchor linking all organism-level parameters (body composition, physiological set-points, homeostatic mechanisms) down to the molecular, atomic, and cellular entries that underpin them.

Body Composition — Reference 70 kg Adult

Component / Element % Body Mass ~Mass (70 kg) Primary Location / Role
Water (H₂O)60%~42 LICF ~28 L, ECF ~14 L (plasma 3 L, interstitial 11 L)
Protein17%~12 kgSkeletal muscle (~8 kg), structural collagen, enzymes, antibodies
Fat (lipid)15%~10.5 kgAdipose (~9 kg), structural membranes, myelin; varies widely
Minerals (total)6%~4.2 kgBone (~3.7 kg as hydroxyapatite Ca/P); electrolytes in solution
Carbohydrate<1%~500 gGlycogen (liver ~100 g, muscle ~400 g); glucose in plasma ~5 g
  • Oxygen (O)65%~45.5 kgDominant element; in water, proteins, lipids, nucleic acids
  • Carbon (C)18%~12.6 kgBackbone of every organic molecule
  • Hydrogen (H)10%~7 kgMost abundant by atom count (~60% of atoms); in water and all C-H bonds
  • Nitrogen (N)3%~2.1 kgAll proteins, nucleotides, haem, nitric oxide
  • Calcium (Ca)1.5%~1.05 kg99% in bone; cytosolic Ca²⁺ is universal second messenger
  • Phosphorus (P)1.0%~700 g85% in bone; ATP, phospholipids, nucleic acids
  • Potassium (K)0.35%~245 gPrincipal intracellular cation; resting membrane potential
  • Sodium (Na)0.15%~105 gPrincipal extracellular cation; osmolality, action potentials
  • Trace minerals<0.1%<70 gFe (haemoglobin/cytochromes), Zn (enzymes), Mg (ATP-Mg, 300+ enzymes), I (thyroid hormones), Se (glutathione peroxidase), Cu, Mn, Cr, Mo

Key Physiological Parameters — Rest vs. Exercise

Parameter Rest Moderate exercise Maximal exercise (trained)
Heart rate (HR)60–80 bpm100–140 bpm180–200 bpm
Stroke volume (SV)60–80 mL100–130 mL160–200 mL (trained)
Cardiac output (CO)~5 L/min12–18 L/min20–40 L/min (elite)
Mean arterial pressure (MAP)~93 mmHg100–110 mmHg110–120 mmHg
Systemic vascular resistance (SVR)~1200 dyn·s/cm⁵↓ 50–60%↓ 70–75%
VO₂ (oxygen consumption)~250 mL/min (3.5 mL/kg/min)1.5–2.5 L/min3–6 L/min
Ventilation (VE)~6 L/min30–60 L/min120–180 L/min
Respiratory rate (RR)12–16 breaths/min20–30 breaths/min40–60 breaths/min
Arterial O₂ saturation (SpO₂)97–99%96–99%93–98% (may fall at elite max)
Blood glucose4.4–5.6 mmol/L4–7 mmol/L4–8 mmol/L
Core body temperature36.5–37.5 °C38–39 °C39–41 °C
Plasma lactate<1 mmol/L2–4 mmol/L (LT1–LT2)8–15 mmol/L

Systems Integration — All 11 Systems

         ┌─────────────────────────────────────────────────────────────┐
         │              NERVOUS SYSTEM (CNS + PNS + ANS)               │
         │  Coordinates all other systems; ~20% resting energy budget  │
         └─────┬───────────────────┬───────────────────────┬───────────┘
               │ motor/sensory     │ autonomic             │ HPA axis
               ▼                  ▼                        ▼
  ┌────────────────────┐  ┌────────────────────┐  ┌────────────────────┐
  │  MUSCULOSKELETAL   │  │  CARDIOVASCULAR    │  │   ENDOCRINE        │
  │  Movement, support │◄─┤  O₂/nutrient       │  │  Hormonal broadcast│
  │  Haematopoiesis    │  │  delivery           │  │  Metabolic control │
  │  Myokines (IL-6,   │  │  CO × (CaO₂−CvO₂) │  │  HPA, HPT, HPG    │
  │  irisin, BDNF)     │  │  = VO₂ (Fick)      │  │  Insulin/glucagon  │
  └─────────┬──────────┘  └──────┬─────────────┘  └──────┬─────────────┘
            │ O₂ demand           │ transport               │ hormones
            │                    ▼                         │
            │         ┌────────────────────┐               │
            │         │  RESPIRATORY       │               │
            │         │  O₂ uptake / CO₂   │               │
            │         │  elimination       │               │
            │         │  pH buffering      │               │
            │         └──────┬─────────────┘               │
            │                │ oxygenated blood             │
            ▼                ▼                              ▼
  ┌────────────────────┐  ┌────────────────────┐  ┌────────────────────┐
  │  LYMPHATIC /       │  │  RENAL             │  │  DIGESTIVE         │
  │  IMMUNE            │  │  Fluid/electrolyte │  │  Nutrient absorption│
  │  Pathogen defence  │◄─┤  homeostasis       │  │  Liver: metabolic  │
  │  GC reactions      │  │  RAAS / EPO /      │  │  hub; bile; detox  │
  │  OPSI protection   │  │  Calcitriol        │  │  Microbiome         │
  └────────────────────┘  └──────┬─────────────┘  └──────┬─────────────┘
                                  │ fluid/Na⁺              │ nutrients
                                  ▼                        ▼
                        ┌────────────────────┐  ┌────────────────────┐
                        │  INTEGUMENTARY     │  │  REPRODUCTIVE      │
                        │  Barrier; thermo-  │  │  Reproduction;     │
                        │  regulation; UV    │  │  HPG axis; sex     │
                        │  vitamin D synth.  │  │  steroids systemic │
                        └────────────────────┘  └────────────────────┘

  Central homeostatic variable: MAP, SpO₂, core temp, pH, plasma [glucose], [Na⁺], [K⁺]
  All systems contribute effectors; nervous + endocrine systems integrate set-point error signals

Homeostasis Principles

Homeostasis is the maintenance of physiological variables within narrow ranges despite continuously varying external and internal conditions. The key principles governing whole-body homeostasis are:

Negative Feedback Loops

The dominant regulatory mechanism. A sensor detects deviation from set-point; an integrator computes error signal; effectors act to oppose the deviation. Examples: baroreflex (baroreceptors → NTS → sympathetic/vagal → HR/SVR → MAP restored); thyroid HPT axis (TRH→TSH→T3/T4→ negative feedback on pituitary TRβ); glucose homeostasis (hyperglycaemia → β cell insulin → GLUT4 translocation → glucose uptake → normoglycaemia).

Positive Feedback & Set-Point Shifts

Positive feedback amplifies deviation and is used for controlled transitions: the LH surge (oestradiol → GnRH → LH spike → ovulation); platelet aggregation in haemostasis; childbirth oxytocin surges. Set-points themselves shift: circadian rhythms lower core temperature at night; exercise training lowers resting HR set-point; fever elevates temperature set-point via PGE2 at the hypothalamic preoptic area.

Feedforward Control

Anticipatory responses occur before a perturbation is detected by sensors. Examples: cephalic phase insulin release (sight/smell of food → vagal → pre-emptive insulin spike before glucose absorption); anticipatory heart rate rise before exercise begins (central command); shivering initiated before core temperature actually falls during cold exposure. Feedforward improves response speed but requires learned/conditioned circuits.

Redundancy & Hierarchy

Critical variables are regulated by multiple overlapping mechanisms: MAP is controlled by short-term (baroreflex, seconds), medium-term (capillary fluid exchange, minutes), and long-term (RAAS/renal pressure-natriuresis, days) mechanisms in hierarchical sequence. Acid-base pH is buffered by bicarbonate (immediate), respiratory compensation (minutes), and renal compensation (hours-days). Loss of one layer is compensated by others until tipping points are crossed.

Fick Principle and VO₂max

The Fick principle is the quantitative foundation of whole-body oxygen physiology, relating the three measurable variables of oxygen transport:

VO₂ = CO × (CaO₂ − CvO₂)
VO₂ = whole-body O₂ consumption (mL/min); CO = cardiac output (L/min); CaO₂ − CvO₂ = arteriovenous O₂ content difference (mL O₂/dL blood). At rest: ~250 mL/min = 5 L/min × ~5 mL/dL.

At maximal exercise, both CO and O₂ extraction increase. VO₂max is primarily limited by cardiac output in health and normoxia (Saltin-Calbet consensus): exercising muscle can extract more oxygen than a healthy heart can deliver, making pump capacity the bottleneck. Endurance training raises VO₂max largely through increased maximal stroke volume (via eccentric ventricular remodeling and expanded plasma volume), not increased maximal HR.

  Exercise demand↑ → CO must rise 4–5× (5 → 20–25 L/min)

  Step 1: Central command (motor cortex) → anticipatory HR↑ before muscles contract
  Step 2: Active muscle metaboreflex (H⁺/K⁺/adenosine → group III/IV afferents → ↑SNS)
  Step 3: Venous return augmentation (skeletal muscle pump + respiratory pump + venoconstriction)
  Step 4: Frank-Starling mechanism (↑EDV → ↑SV) — primary CO augmentation at moderate intensity
  Step 5: Sympathetic-mediated redistribution: muscle β2-AR vasodilation; splanchnic/renal α1 constriction → MAP maintained

  At peak: SV near-maximal → further CO rise = HR-dependent
  Cardiac output ceiling → VO₂max ceiling

Levine (2008) provides the definitive analysis: central (CO) and peripheral (muscle oxidative capacity, mitochondrial density, capillarization) factors both matter, with CO dominant in sedentary individuals and peripheral capacity becoming limiting in highly trained states.

RAAS — Multi-Organ Volume/Pressure Regulator

The renin-angiotensin-aldosterone system is the body's primary long-term, multi-organ mechanism for blood pressure and extracellular volume regulation, integrating kidney, liver, lung, adrenal cortex, pituitary, and hypothalamus:

  Trigger stimuli:
    ↓ Renal perfusion pressure  ─┐
    ↑ Sympathetic (β1-AR)       ├──→ JG cells (juxtaglomerular apparatus) → RENIN secretion
    ↓ Macula densa [Na⁺/Cl⁻]   ─┘

  Renin (kidney) + Angiotensinogen (liver) → Angiotensin I (inactive decapeptide)
       ↓ ACE (lung + vascular endothelium)
  Angiotensin II (Ang II) ──→ AT1 receptor effects:
       ├── Vascular smooth muscle → vasoconstriction → ↑SVR → ↑MAP
       ├── Adrenal cortex (zona glomerulosa) → ALDOSTERONE → Na⁺/H₂O retention → ↑blood volume
       ├── Posterior pituitary → ADH (vasopressin) → renal aquaporin-2 → ↑water retention
       ├── Hypothalamus → thirst centre → ↑fluid intake
       └── Heart/vasculature (chronic) → fibrosis, hypertrophy (maladaptive in HFrEF)

  Negative feedback: ↑MAP → ↓renin secretion; atrial stretch → ANP/BNP → ↓renin/aldosterone

  Drug targets:
    ACE inhibitors (enalapril) → ↓Ang II    ARBs (losartan) → block AT1 receptor
    ARNi sacubitril/valsartan → ↑ANP/BNP + AT1 block    Spironolactone → aldosterone antagonist

Autonomic Regulation & Heart Rate Variability

The autonomic nervous system modulates all visceral organs on a beat-to-beat basis through two opposing limbs. Sympathetic fibres release norepinephrine at β1-AR (heart: ↑HR, ↑contractility, ↑AV conduction) and α1 (vasculature: vasoconstriction). Epinephrine from the adrenal medulla amplifies the response during stress. Parasympathetic fibres release acetylcholine at M2 muscarinic receptors (SA node: ↓HR via IKAch activation; AV node: ↓dromotropy). Vagal tone dominates at rest, suppressing intrinsic SA rate (~100 bpm) to typical resting HR of 60–80 bpm.

Heart rate variability (HRV) — beat-to-beat variation in R-R intervals — is a non-invasive whole-body readout of sympathovagal balance. The high-frequency component (HF-HRV, 0.15–0.4 Hz) reflects vagal tone. High HRV correlates with better cardiovascular outcomes, lower all-cause mortality, and greater cardiac reserve. HRV declines with ageing, heart failure, diabetes, and autonomic neuropathy; it increases with endurance training and improves with vagal neuromodulation therapies.

Whole-Body Pathological Phenotypes

Shock

Failure of cardiac output or systemic vascular resistance to maintain MAP ≥ 60 mmHg → inadequate tissue O₂ delivery → anaerobic metabolism → lactic acidosis → multi-organ dysfunction. Types: distributive (septic, anaphylactic — ↓SVR); hypovolaemic (haemorrhage, burns — ↓preload); cardiogenic (MI, HFrEF — ↓CO); obstructive (PE, tamponade — ↓venous return). Universal endpoint if untreated: MODS (multi-organ dysfunction syndrome) and death.

Heart Failure Syndrome

↓CO → ↓renal perfusion → RAAS activation → Na⁺/H₂O retention → ↑blood volume → pulmonary and peripheral oedema (right/left HF). Simultaneously, ↓CO reduces O₂ delivery to exercising muscle → exertional dyspnoea and fatigue (HFrEF: EF <40%). Maladaptive RAAS and sympathetic activation drives cardiac remodelling, worsening function. Key biomarker: BNP/NT-proBNP (released by stretched myocytes). Treatment: ACE-i/ARB/ARNi + β-blocker + MRA + SGLT2 inhibitor.

Hypertension

Sustained MAP elevation (systolic ≥ 130 mmHg and/or diastolic ≥ 80 mmHg, ACC/AHA 2017). Multi-scale origin: ↑Na⁺ retention (kidney; genetic variants in NCC, ENaC), ↑RAAS activation, ↑SNS tone, ↑vascular smooth muscle tone, arterial stiffness (collagen cross-linking, reduced NO). Consequence: left ventricular hypertrophy, stroke, MI, CKD, retinopathy. Primary HTN: >95% of cases — polygenic. Secondary causes: renal artery stenosis, phaeochromocytoma, primary aldosteronism, OSA.

Exercise Intolerance

↓VO₂max from ↓COmax (HFrEF, coronary disease), ↓skeletal muscle oxidative capacity (deconditioning, mitochondrial disease, sarcopenia), ↓haemoglobin O₂-carrying capacity (anaemia), or pulmonary limitation (COPD, ILD). CPET (cardiopulmonary exercise test) with VO₂max measurement distinguishes cardiac vs. ventilatory vs. peripheral causes — the Fick equation disaggregated into components.

Orthostatic Hypotension

↓MAP ≥ 20/10 mmHg within 3 min of standing. Mechanisms: ↓baroreflex sensitivity (ageing, autonomic neuropathy in diabetes/Parkinson's), ↓venous return (hypovolaemia, vasodilation from medications), ↓cardiac reserve. Can cause syncope, falls, and cognitive impairment from cerebral hypoperfusion. Treatment: volume expansion, compression garments, fludrocortisone, midodrine (α1 agonist).

Metabolic Syndrome

Cluster of whole-body metabolic dysregulation: central obesity (waist ≥ 102 cm men / ≥ 88 cm women), hyperglycaemia (fasting ≥ 5.6 mmol/L), hypertriglyceridaemia (≥ 1.7 mmol/L), low HDL-C, hypertension. Prevalence ~30–40% in Western populations. Pathophysiology: insulin resistance → adipocyte-driven ectopic lipid deposition → hepatic lipogenesis → VLDL ↑ + HDL-C ↓; visceral adipose IL-6/TNF-α → systemic inflammation → endothelial dysfunction → atherosclerosis. Highly amenable to lifestyle intervention.

Physiological Variation

Variable Key determinants Physiological effect
SexTestosterone (muscle mass, RBC mass, LV size); oestrogen (lipid profile, coagulation, bone)Women: higher resting HR, lower VO₂max/kg (~10–15%), higher HDL-C, lower haemoglobin; men: higher SVT/MI risk pre-menopause
AgeVO₂max falls ~10%/decade after 25; arterial stiffness ↑ (collagen cross-linking); HRV ↓; baroreflex sensitivity ↓Reduced exercise capacity; orthostatic hypotension risk; impaired immune response; sarcopenia after 50
Athletic trainingEccentric LV hypertrophy; plasma volume expansion (~10–20%); ↑mitochondrial density↑SV at rest and exercise; ↓resting HR; ↑VO₂max; ↑HRV; altered Fick equation both sides
Altitude↓PO₂ → ↓SaO₂ → ↓CaO₂Acute: ↓VO₂max, ↑HR, ↑VE. Adaptation (weeks): ↑EPO → ↑RBC mass → restored O₂ delivery; ↑2,3-DPG shifts HbO₂ curve right
Obesity↑Adipose mass → ↑mechanical load, ↑inflammatory cytokines, insulin resistance, OSA↓VO₂max (relative), ↑BP, ↑risk metabolic syndrome, ↓HRV, impaired immune function

References

  • Hall JE, Hall ME. Guyton and Hall Textbook of Medical Physiology. 14th ed. Elsevier; 2020. ISBN 978-0-323-59712-8. elsevier.com
  • Saltin B, Calbet JA. Point: in health and in a normoxic environment, VO2max is limited by cardiac output. J Appl Physiol. 2006;100(2):744–748. doi:10.1152/japplphysiol.01431.2005 · PubMed 16428358
  • Levine BD. VO2max: what do we know, and what do we still need to know? J Physiol. 2008;586(1):25–34. doi:10.1113/jphysiol.2007.147629 · PubMed 17855754
  • Bianconi E et al. An estimation of the number of cells in the human body. Ann Hum Biol. 2013;40(6):463–471. doi:10.3109/03014460.2013.807878
  • Task Force of the European Society of Cardiology and the North American Society. Heart rate variability: standards of measurement, physiological interpretation, and clinical use. Circulation. 1996;93(5):1043–1065. PMID 8598068.